High-Risk Acute Diarrhea Testing
For patients with high-risk acute diarrhea, order stool testing for Salmonella, Shigella, Campylobacter, Yersinia, C. difficile, and STEC when they present with fever ≥38.5°C, bloody or mucoid stools, severe abdominal cramping, signs of sepsis, recent antibiotic use, or belong to high-risk populations. 1, 2
Clinical Indicators for Stool Testing
Inflammatory Markers Requiring Testing
- Fever: Documented temperature ≥38.5°C warrants stool cultures 2, 3
- Bloody or mucoid stools: Always test for bacterial pathogens including STEC 1, 2, 3
- Severe abdominal cramping or tenderness: Indicates potential invasive pathogen requiring culture 2, 4
- Signs of sepsis: Tachycardia, hypotension, or altered mental status mandate immediate testing and blood cultures 2, 3
Recent Antibiotic Exposure
- Test for C. difficile in any patient with diarrhea who received antibiotics within the previous 8-12 weeks 1, 2, 5
- Submit a single diarrheal stool specimen for C. difficile toxin assay initially 1
- If diarrhea persists and initial assay is negative, submit 1-2 additional specimens 1
- C. difficile yields are 15-20% in patients with healthcare-associated diarrhea or recent antibiotic use 1
High-Risk Populations Requiring Comprehensive Testing
Age-Based Risk
- Infants <3 months: Always perform stool cultures and blood cultures regardless of other factors 2
- Age >65 years: Consider cultures even if diarrhea develops >3 days after hospitalization 1
Immunocompromised Patients
- Require broad evaluation including bacterial culture, viral studies, and parasitic examination 2, 5
- This includes HIV patients, those undergoing chemotherapy, transplant recipients, and patients with neutropenia 1, 2
- Consider duodenal aspirate for Giardia, Strongyloides, Cystoisospora, or microsporidia in select cases 1
Additional High-Risk Conditions
- Hemolytic anemia (concern for STEC/HUS) 2
- Suspected enteric fever (travel to endemic areas) 2
- Healthcare-associated diarrhea developing >3 days after hospitalization 1
Epidemiologic Triggers for Specific Testing
Travel and Exposure History
- Vibrio species: Large volume rice-water stools, brackish water exposure, raw shellfish consumption, or travel to cholera-endemic regions within 3 days 2
- Yersinia enterocolitica: School-aged children with right lower quadrant pain mimicking appendicitis or infants exposed to raw/undercooked pork 2
Outbreak Settings
- Multiple people with diarrhea sharing a common meal or sudden rise in cases requires coordination with public health authorities and stool testing 2
Optimal Specimen Collection
Specimen Type
- A diarrheal stool sample (one that takes the shape of the container) is the optimal specimen 1, 5
- If timely diarrheal stool cannot be collected, a rectal swab may be used for bacterial detection, though molecular techniques are less dependent on specimen quality 1, 5
- Fresh stool is preferred for viral, protozoal agents, and C. difficile toxin 1
Number of Specimens
- A single diarrheal stool specimen is recommended for most bacterial, viral, and protozoal testing 1, 5
- Multiple specimens are unnecessary and not cost-effective 1
Blood Culture Indications
Obtain blood cultures in the following scenarios:
- Infants <3 months with diarrhea 2
- Any age with signs of septicemia or systemic manifestations 2, 5
- Suspected enteric fever 2
- Immunocompromised patients 2
STEC-Specific Approach
- Use methods that detect Shiga toxin and distinguish E. coli O157:H7 from other STEC serotypes 5
- Employ Sorbitol-MacConkey agar or chromogenic agar to screen for O157:H7 2
- Use genomic assays for non-O157 STEC detection 2
Critical Pitfalls to Avoid
- Never administer antibiotics before testing in suspected STEC cases, as this increases hemolytic uremic syndrome risk 2
- Do not use fecal leukocyte examination or stool lactoferrin to establish the cause of acute infectious diarrhea—these tests should not guide testing decisions 1, 5
- Do not test asymptomatic patients or perform follow-up testing after symptom resolution for case management 1, 6
- Avoid multiple stool examinations for ova and parasites in hospitalized patients with nosocomial diarrhea (low yield) 1
- Do not culture specimens from patients hospitalized >3 days for standard bacterial pathogens unless they were admitted for diarrheal illness, are part of an outbreak, or have specific risk factors (age >65, comorbidities, neutropenia, HIV) 1