What are the differential diagnoses and recommended management for cough in children?

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Differential Diagnoses for Pediatric Cough

The differential diagnosis of cough in children depends critically on duration (acute <4 weeks versus chronic ≥4 weeks), cough quality (wet/productive versus dry), and the presence of specific cough pointers that suggest serious underlying disease. 1

Classification by Duration

Acute Cough (<4 Weeks)

  • Viral upper respiratory tract infections – the most common cause, typically self-limited and resolving within 1-3 weeks, though 10% persist beyond 25 days 2, 3
  • Bronchiolitis – particularly in infants, with 90% cough-free by day 21 3
  • Croup – presents with sudden-onset barking cough, stridor, and respiratory distress, most commonly caused by parainfluenza viruses 4
  • Pneumonia – consider when high fever (≥39°C), respiratory distress, hypoxia, or focal findings are present 2, 3
  • Foreign body aspiration – sudden onset without prodromal viral symptoms 4

Chronic Cough (≥4 Weeks)

The approach diverges based on whether the cough is specific (with pointers suggesting underlying disease) or non-specific (isolated dry cough without red flags). 1

Specific Cough Etiologies (Wet/Productive Cough or Red Flag Features)

Wet/productive cough differentials:

  • Protracted bacterial bronchitis (PBB) – the most common cause of chronic wet cough in otherwise healthy children, responds to 2-week antibiotic course targeting Streptococcus pneumoniae, Haemophilus influenzae, and Moraxella catarrhalis 1, 2
  • Bronchiectasis – consider when wet cough persists despite appropriate antibiotics, or with digital clubbing, failure to thrive, or recurrent pneumonia 1
  • Suppurative lung disease – chronic wet cough with systemic features 1

Other specific cough pointers requiring investigation:

  • Asthma – when accompanied by documented wheeze on examination, exercise intolerance, nocturnal symptoms, or reversible airflow obstruction on spirometry 1, 2
  • Aspiration lung disease – coughing with feeds, recurrent pneumonia, neurodevelopmental disorders 1
  • Retained foreign body – sudden onset, unilateral findings, persistent despite treatment 1
  • Cardiac anomalies – cough with exertional dyspnea, poor growth, or cardiac examination abnormalities 1
  • Interstitial lung disease – cough with hypoxemia, digital clubbing, or diffuse crackles 1
  • Tuberculosis – chronic cough with weight loss, night sweats, or TB exposure 1

Non-Specific Cough (Dry Cough Without Red Flags)

  • Post-infectious cough – follows recent viral illness, typically resolves spontaneously within 8 weeks 2
  • Upper airway cough syndrome (post-nasal drip) – chronic rhinorrhea, throat clearing, nasal congestion 2
  • Habit cough/somatic cough syndrome – absent during sleep, barking quality, no response to medical therapy 5

Age-Specific Considerations

Preschool children (<6 years):

  • Respiratory tract infections including PBB are diagnosed three times more often than in school-age children 5
  • Episodic viral wheeze and recurrent obstructive bronchitis are common 5
  • Spirometry typically unreliable in children <6 years 1

School-age children (≥6 years):

  • Asthma and asthma-like conditions are diagnosed 3.5 times more often than in preschoolers, accounting for 36% of chronic cough diagnoses 5
  • Spirometry with pre- and post-bronchodilator testing becomes feasible and recommended 1

Critical Red Flags Requiring Urgent Investigation

Specific cough pointers mandating immediate work-up: 1

  • Coughing with feeds or vomiting
  • Digital clubbing
  • Failure to thrive or weight loss
  • Hemoptysis
  • Chest wall deformity
  • Cardiac abnormalities on examination
  • Focal lung findings (unilateral wheeze, crackles)
  • Immune deficiency
  • Neurodevelopmental abnormality
  • Oxygen desaturation

Recommended Diagnostic Algorithm

For ALL Children with Chronic Cough (≥4 Weeks):

Mandatory initial investigations: 1, 2

  1. Chest radiograph – to identify structural abnormalities, pneumonia, foreign body, or bronchiectasis
  2. Spirometry (pre- and post-β2 agonist) – in children ≥6 years to assess for reversible airflow obstruction
  3. Systematic classification – determine if cough is wet versus dry, and identify any specific cough pointers

Management Based on Cough Quality:

If WET/productive cough without other red flags: 1, 2

  • Diagnose protracted bacterial bronchitis and treat with amoxicillin or amoxicillin-clavulanate for 2 weeks
  • If cough persists, extend antibiotics for an additional 2 weeks
  • If cough resolves with antibiotics, diagnosis of PBB is confirmed
  • If cough persists despite 4 weeks of antibiotics, investigate for bronchiectasis or other suppurative lung disease

If DRY cough with asthma features (wheeze, exercise intolerance, nocturnal symptoms): 1, 2

  • Trial of inhaled corticosteroids (beclomethasone 400 μg/day or equivalent) for 2-4 weeks maximum
  • Re-evaluate at 2-4 weeks and discontinue if no response
  • Do NOT diagnose asthma based on cough alone – chronic cough without wheeze is not associated with airway inflammation profiles suggestive of asthma 2, 3

If DRY cough without specific features (non-specific cough): 1, 2

  • Often resolves spontaneously without specific treatment
  • Address environmental tobacco smoke exposure
  • Provide parental reassurance about expected illness duration
  • Re-evaluate if persists beyond 8 weeks

Common Pitfalls to Avoid

  • Never use over-the-counter cough and cold medications in children <6 years – they provide no benefit and may cause serious harm including 54 decongestant-related and 69 antihistamine-related fatalities in children <6 years between 1969-2006 3
  • Never empirically treat for asthma unless documented wheeze or reversible airflow obstruction is present – atopy or positive allergy testing does not predict response to asthma therapy in isolated cough 2
  • Never use codeine in children due to risk of respiratory distress 2
  • Avoid empirical treatment for upper airway cough syndrome, gastroesophageal reflux, or asthma unless specific clinical features support these diagnoses 1, 2
  • Do not assume colored nasal discharge indicates bacterial infection – it does not reliably distinguish viral from bacterial etiology 3

Evidence-Based Supportive Care

For acute cough in children >1 year: 2

  • Honey is the only evidence-based first-line treatment, offering more relief than placebo, diphenhydramine, or no treatment
  • Adequate hydration to thin secretions 2
  • Acetaminophen or ibuprofen for fever and discomfort 2

Environmental modifications: 2, 3

  • Eliminate tobacco smoke exposure – worsens respiratory symptoms and impairs secretion clearance
  • Address parental expectations and anxiety about cough duration

When to Refer to Pediatric Pulmonology

Consider specialist referral for: 1, 2

  • Failure to respond to appropriate initial management
  • Concerning symptoms: hemoptysis, weight loss, persistent focal findings, digital clubbing
  • Recurrent episodes despite appropriate treatment
  • Suspected anatomical abnormality requiring bronchoscopy
  • Chronic wet cough persisting beyond 4 weeks of appropriate antibiotics

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Guideline

Management of Cough and Diminished Breath Sounds in Children

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2026

Guideline

Management of Respiratory Symptoms in Children Under 2 Years

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2026

Guideline

Management of Croup in Toddlers

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2026

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

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