What is the treatment for candida in urine culture?

Medical Advisory BoardAll articles are reviewed for accuracy by our Medical Advisory Board
Educational purpose only • Exercise caution as content is pending human review
Article Review Status
Submitted
Under Review
Approved

Last updated: November 20, 2025View editorial policy

Personalize

Help us tailor your experience

Which best describes you? Your choice helps us use language that's most understandable for you.

Treatment of Candida in Urine Culture

For symptomatic Candida urinary tract infections with fluconazole-susceptible species, oral fluconazole 200 mg (3 mg/kg) daily for 2 weeks is the treatment of choice. 1

Initial Assessment: Determine if Treatment is Needed

Not all candiduria requires antifungal therapy—most cases represent colonization or catheter contamination rather than true infection. 1, 2

Treatment is indicated for:

  • Symptomatic cystitis (dysuria, frequency, urgency, suprapubic pain) 1, 3
  • Pyelonephritis (fever, flank pain, systemic symptoms) 1
  • Neutropenic patients (even if asymptomatic) 1, 4
  • Patients undergoing urologic procedures 1, 4
  • Very low-birth-weight infants 2
  • Severely immunocompromised patients with fever 4

Treatment is NOT indicated for:

  • Asymptomatic candiduria in otherwise healthy patients 1, 4, 5
  • Catheter-associated candiduria without symptoms 1

First-Line Management: Remove Predisposing Factors

Before initiating antifungals, remove the indwelling bladder catheter if feasible—this alone resolves candiduria in approximately 50% of asymptomatic patients. 1, 4, 6 This represents the critical first step and may eliminate the need for antifungal therapy entirely. 4

Treatment Algorithm by Clinical Scenario

Symptomatic Cystitis

For fluconazole-susceptible organisms (C. albicans, most C. tropicalis, C. parapsilosis):

  • Oral fluconazole 200 mg (3 mg/kg) daily for 2 weeks 1, 3, 5
  • Fluconazole is preferred because it achieves high urinary concentrations in active form and is available orally 1, 2

For fluconazole-resistant C. glabrata:

  • Amphotericin B deoxycholate 0.3–0.6 mg/kg daily for 1–7 days 1
  • OR oral flucytosine 25 mg/kg four times daily for 7–10 days 1
  • Amphotericin B bladder irrigation (50 mg/L sterile water daily for 5 days) may be useful as adjunctive therapy 1

For C. krusei (intrinsically fluconazole-resistant):

  • Amphotericin B deoxycholate 0.3–0.6 mg/kg daily for 1–7 days 1

Pyelonephritis

For fluconazole-susceptible organisms:

  • Oral fluconazole 200–400 mg (3–6 mg/kg) daily for 2 weeks 1, 5

For fluconazole-resistant C. glabrata:

  • Amphotericin B deoxycholate 0.3–0.6 mg/kg daily for 1–7 days with or without oral flucytosine 25 mg/kg four times daily 1
  • Monotherapy with oral flucytosine 25 mg/kg four times daily for 2 weeks is a weaker alternative 1

For C. krusei:

  • Amphotericin B deoxycholate 0.3–0.6 mg/kg daily for 1–7 days 1

Eliminate urinary tract obstruction if present—this is essential for treatment success. 1

Pre-Procedure Prophylaxis

For patients undergoing urologic procedures with candiduria:

  • Oral fluconazole 400 mg (6 mg/kg) daily for several days before and after the procedure 1, 4
  • OR Amphotericin B deoxycholate 0.3–0.6 mg/kg daily for several days before and after the procedure 1

Fungus Balls

Surgical or endoscopic removal is mandatory—antifungals alone are insufficient. 1, 5

  • Systemic antifungal therapy as noted above for cystitis or pyelonephritis 1
  • Irrigation through nephrostomy tubes with Amphotericin B deoxycholate 25–50 mg in 200–500 mL sterile water as adjunctive therapy 1

Species-Specific Considerations

C. albicans (most common, ~60% of isolates) is typically fluconazole-susceptible. 7, 8

C. glabrata (second most common, ~20% of isolates) frequently demonstrates fluconazole resistance and requires alternative therapy. 1, 8

C. krusei is intrinsically resistant to fluconazole and always requires amphotericin B. 1

C. tropicalis and C. parapsilosis are usually fluconazole-susceptible. 8

Critical Pitfalls to Avoid

Do not use echinocandins (caspofungin, micafungin, anidulafungin) for lower urinary tract infections—they achieve minimal urinary concentrations and are ineffective despite adequate tissue levels. 1, 5, 6 While there are case reports of success for renal parenchymal infections, failures are common and these agents are not recommended. 1

Do not use lipid formulations of amphotericin B for Candida UTI—they do not achieve adequate urine concentrations and treatment failures are well-documented. 1, 3

Do not use voriconazole or other azoles (besides fluconazole) for lower UTI—they have poor urinary excretion. 1, 5

Do not treat asymptomatic candiduria in otherwise healthy patients—this represents colonization, and treatment does not prevent complications or candidemia. 1, 4, 5

Do not overlook the possibility of disseminated candidiasis in high-risk patients—if candiduria occurs with candidemia or suspected disseminated disease, treat as candidemia (not as isolated UTI). 1, 3

Monitoring and Follow-Up

Continue therapy until symptoms resolve and urine cultures are negative for Candida species. 3, 5 The standard duration is 2 weeks for both cystitis and pyelonephritis. 1, 3, 5

Bladder irrigation with amphotericin B resolves candiduria in 80–90% of patients initially, but relapse rates are very high—this approach is generally discouraged except for refractory cystitis due to azole-resistant organisms. 1

References

Guideline

Guideline Directed Topic Overview

Dr.Oracle Medical Advisory Board & Editors, 2025

Research

Candida urinary tract infections in adults.

World journal of urology, 2020

Guideline

Treatment of Candiduria with Urinary Frequency

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Management of Budding Yeast on Urinalysis

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Guideline

Management of Male with Yeast in Urine

Praxis Medical Insights: Practical Summaries of Clinical Guidelines, 2025

Research

Candida urinary tract infections: treatment options.

Expert review of anti-infective therapy, 2007

Research

[Recommendations of the Infectious Disease Committee of the French Association of Urology. Diagnosis, treatment and monitoring candiduria].

Progres en urologie : journal de l'Association francaise d'urologie et de la Societe francaise d'urologie, 2011

Research

Antifungal susceptibilities of Candida species isolated from urine culture.

Journal of infection and chemotherapy : official journal of the Japan Society of Chemotherapy, 2016

Professional Medical Disclaimer

This information is intended for healthcare professionals. Any medical decision-making should rely on clinical judgment and independently verified information. The content provided herein does not replace professional discretion and should be considered supplementary to established clinical guidelines. Healthcare providers should verify all information against primary literature and current practice standards before application in patient care. Dr.Oracle assumes no liability for clinical decisions based on this content.

Have a follow-up question?

Our Medical A.I. is used by practicing medical doctors at top research institutions around the world. Ask any follow up question and get world-class guideline-backed answers instantly.